NGS Data-analyysiratkaisu helppoon ja nopeaan koronavarianttien tunnistukseen!
Kauttamme Flomics pipeline:
- Täysin automatisoitu, helppo & nopea ratkaisu
- Lataa fastq-sekvenssitiedostot pilveen ja käynnistä
- Korona-varianttiraportit valmiita 30–40 minuutissa
- SARS-CoV-2 referenssigenomi NC_045512.2
- Uudet variantit helposti lisättävissä tunnistettaviksi
- Katso demo data täältä (klikkaa ”Log in with demo account”)!
- GDPR compliant
- Tunnistaa automaattisesti jo annotoidut koronamuunnokset; UK variant, South-African, Brazilian, (Omicron, Delta, Mu,…)
Usean COVID NGS-amplikonipaneelin tiedot jo valmiiksi integroituna:
- ARTICnetwork V1, V2 and V3
- Paragon Genomics SARS-CoV-2 panel and FLEX panel
- Swift Biosciences amplicon panels SARS-CoV-2 and SNAP SARS-CoV-2 Additional Genome Coverage
Fully automated cloud-based solution for SARS-CoV-2 NGS-based testing data analysis
- It starts with the FASTQ files as input, directly from the sequencer (Illumina, MGI)
- It outputs the complete SARS-CoV-2 genome consensus generated with annotation of the variants present and their interpretation
- It also provides quality control and intermediate information that the user can then use for downstream analysis
The pipeline will automatically take your data through the following steps:
- Quality control
- Adapter trimming
- Primer removal (for amplicon data)
- Viral load calculation
- Read alignment
- Variant calling and annotation
- Strain identification
- Intuitive reporting
With a few clicks you can transform your raw data into interpretable clinical information that will help manage this pandemic, without the need for bioinformatics expertise – there’s less customization which makes it easier & faster to implement & use.
Flomics’ platform is library kit agnostic – you can use the platform with data generated with Paragon, Swift or even the open-source ARTIC protocol, with the same effort.
Flomics team is always available to take users’ feedback and customize the results based on it
Easy to test – Ask voucher code for free runs for 10 samples, Demo Data available (”Log in with demo account”).